Peer-reviewed publications:

  1. Rhie, A., McCarthy, S. A. ... (44 others) ... Malinsky, M., ... (72 others) ... Durbin, R., Phillippy, A. M. & Jarvis, E. D. (2020) Towards complete and error-free genome assemblies of all vertebrate species. Nature 592, 737–746. doi: https://doi.org/10.1038/s41586-021-03451-0.

  2. Svardal, H., Salzburger, W. & Malinsky, M. (2021) Genetic Variation and Hybridization in Evolutionary Radiations of Cichlid Fishes. Annu Rev Anim Biosci 9 (1), 55–79. doi: https://doi.org/10.1146/annurev-animal-061220-023129.

  3. Malinsky, M., Matschiner, M. & Svardal, H. (2021) Dsuite ‐ Fast D‐statistics and related admixture evidence from VCF files. Molecular Ecology Resources 21 (2), 584-595. doi: https://doi.org/10.1111/1755-0998.13265.

  4. Ronco, F., Matschiner, M., Böhne, A., Boila, A., Büscher, H.H., El Taher, A., Indermaur, A., Malinsky, M., Ricci, V., Kahmen, A., Jentoft, S. & Salzburger, W. (2021) Drivers and dynamics of a massive adaptive radiation in cichlid fishes. Nature 589, 76-81. doi: https://doi.org/10.1038/s41586-020-2930-4.

  5. Patil, C., Sylvester, J. B., Abdilleh, K., Norsworthy, M. W., Pottin, K., Malinsky, M., Bloomquist, R. F., Johnson, Z. V., McGrath, P. T. & Streelman, J. T. (2021) Genome-enabled inference of evolutionary divergence in brains and behavior. Scientific Reports. doi: https://doi.org/10.1101/2020.10.12.336453.

  6. Carleton, K. L., Conte, M. A., Malinsky, M., Nandamuri, S. P., Sandkam, B. A., Meier, J. I., Mwaiko, S., Seehausen, O. & Kocher, T. D. (2020) Movement of transposable elements contributes to cichlid diversity. Molecular Ecology. doi: https://doi.org/10.1111/mec.15685.

  7. Svardal, H., Quah, F. X., Malinsky, M., Ngatunga, B. P., Miska, E. A., Salzburger, W., Genner, M. J., Turner, G. F. & Durbin, R. (2020) Ancestral Hybridization Facilitated Species Diversification in the Lake Malawi Cichlid Fish Adaptive Radiation. Molecular Biology and Evolution 37, 1100–1113.

  8. Malinsky, M., Svardal, H., Tyers, A. M., Genner, M. J., Turner, G. F. Miska, E. A., Durbin, R. (2018) Whole genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow. Nature Ecology & Evolution 2, 1940–1955. doi: https://doi.org/10.1038/s41559-018-0717-x
    (also see Nat. Ecol. Evo. "Behind the paper" story)

  9. Malinsky, M., Trucchi, E., Lawson, D. J. & Falush, D. (2018) RADpainter and fineRADstructure: Population Inference from RADseq Data. Molecular Biology and Evolution 35, 1284–1290. doi: https://doi.org/10.1093/molbev/msy023.

  10. Malinsky, M. & Salzburger, W. (2016) Environmental context for understanding the iconic adaptive radiation of cichlid fishes in Lake Malawi. PNAS 113, 11654–11656. doi: https://doi.org/10.1073/pnas.1614272113.

  11. Malinsky, M., Challis, R., Tyers, A. M., Schiffels, S., Terai, Y., Ngatunga, B. P., Miska, E. A., Durbin, R., Genner, M. J., Turner, G. F.  (2015) Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake. Science (New York, N.Y.) 350, 1493–1498. doi: https://doi.org/10.1126/science.aac9927.

  12. Brawand, D., Wagner, C. E., Li, Y. I., Malinsky, M., Keller, I., … (81 others) … and Di Palma, F. (2014). The genomic substrate for adaptive radiation in African cichlid fish. Nature, 513(7518), 375–381. doi: https://doi.org/10.1038/nature13726.

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Preprints:

  1. Vernaz, G., Malinsky, M., Svardal, M., Du, M., Tyers, A. M., Santos, M. E., Durbin, R., Genner, M. J., Turner, G. F. & Miska, E. A. (2020) The methylomes of Lake Malawi cichlids reveal epigenetic variation associated with phenotypic diversification. bioRxiv. doi: https://doi.org/10.1101/2020.11.24.383034.

  2. Malinsky, M., Simpson, J. T. & Durbin, R. (2016) trio-sga: facilitating de novo assembly of highly heterozygous genomes with parent-child trios. bioRxiv. doi: https://doi.org/10.1101/051516.

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PUBLICATIONS

References and Links to Papers - see also Google Scholar